GillespieSSA2 is a fast, scalable, and versatile framework for simulating large systems with Gillespie’s Stochastic Simulation Algorithm (SSA) (Cannoodt et al. 2021). This package is the spiritual ...

Recent lineage tracing based single-cell techniques (LT-scSeq), e.g., the Lineage And RNA RecoverY (LARRY) barcoding system, have enabled clonally resolved interpretation of differentiation ...

The Gillespie algorithm provides statistically exact methods for simulating stochastic dynamics modeled as interacting sequences of discrete events including systems of biochemical reactions or ...

This important study introduces a fully differentiable variant of the Gillespie algorithm as an approximate stochastic simulation scheme for complex chemical reaction networks, allowing kinetic ...

During the peer-review process the editor and reviewers write an eLife assessment that summarises the significance of the findings reported in the article (on a scale ranging from landmark to useful) ...

Approximate numerical methods are one of the most used strategies to extract information from many-interacting-agents systems. In particular, numerical approximations are of extended use to deal with ...

Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to ...

Abstract: The stochastic effects in photoresist patterning is of great concern in the implementation of EUV lithography. The stochastic nature of EUV chemically amplified resist requires new modeling ...

Mangrove restoration in the coastal zones is a concept proposed by environmental conservationists. Among the cited advantages of mangrove restoration are providing socio-economic services and coastal ...

Ecological immunology addresses the interactions between host immunity and the environment. Locusts display density-dependent phase transitions between solitary and gregarious locusts. In control ...