This important study introduces a fully differentiable variant of the Gillespie algorithm as an approximate stochastic simulation scheme for complex chemical reaction networks, allowing kinetic ...

topolow is an R package that implements a novel, physics-inspired algorithm for Euclidean embedding of potentially non-metric, sparse, and noisy dissimilarity data. The algorithm converts ...

Gene expression profiles, including those from 35 LDH patients and 43 healthy volunteers, were downloaded from the GEO database (GSE124272, GSE150408, GSE23130, GSE153761). After merging four ...

NeighborNet constructs phylogenetic networks to visualize distance data. It is a popular method used in a wide range of applications. While several studies have investigated its mathematical features, ...

SAMBA is a FAIR scalable workflow integrating, into a unique tool, state-of-the-art bioinformatics and statistical methods to conduct reproducible eDNA analyses using Nextflow. SAMBA starts processing ...

1 Department of Basic Sciences, School of Basic and Biomedical Sciences, University of Health and Allied Sciences, Ho, Ghana. 2 Department of Statistics and Actuarial Science, University of Ghana, ...

Nothing says “I love you” like a customizable algebraic equation. By Siobhan Roberts Meet Süss, a math widget after your own heart. (You can also visit the widget on its website here, which you might ...

1 Faculty of Computing, Botho University-Maseru Campus, Maseru, Lesotho. 2 Department of Physics and Electronics, National University of Lesotho, Roma, Lesotho. Classical machine learning, which is at ...

A database searching approach can be used for metabolite identification in metabolomics by matching measured tandem mass spectra (MS/MS) against the predicted fragments of metabolites in a database.

Molecular dynamics simulation methods produce trajectories of atomic positions (and optionally velocities and energies) as a function of time and provide a representation of the sampling of a given ...

Dynamic programming algorithms guarantee to find the optimal alignment between two sequences. For more than a few sequences, exact algorithms become computationally impractical, and progressive ...