Abstract: We present a linear time and space suffix array (SA) construction algorithm called the SA-IS algorithm.The SA-IS algorithm is novel because of the LMS-substrings used for the problem ...

Class lecture notes through page 157. Optionally, Aho, Lam, Sethi, and Ullman, Compilers: Principles, Techniques, and Tools, Chapters 1; 3 through 3.5; 4 through p ...

Abstract: We present, in this paper, two efficient algorithms for linear time suffix array construction. These two algorithms achieve their linear time complexities, using the techniques of divide-and ...

Usage examples are provided in the HPCsharpExamples directory, which has a VisualStudio 2022 solution. Build and run it to see performance gains on your computer or a cloud node. To get the maximum ...

Georgia Tech's online master's in computer science has taken off like a rocket ship. It is the most successful degree program in the history of higher education and we should all take important ...

Sequence tag index in the field of computational proteomics can be used to facilitate faster open-search-based identification of modified peptides and in-depth analysis of mass spectrometry data. In ...

In the field of genome assembly, contig assembly is one of the most important parts. Contig assembly requires the processing of overlapping regions of a large number of DNA sequences and this ...

Aligning short-read sequences is the foundational step to most genomic and transcriptomic analyses, but not all tools perform equally, and choosing among the growing body of available tools can be ...

Our method, DeepNovo, introduces deep learning to de novo peptide sequencing from tandem MS data, the key technology for protein characterization in proteomics research. DeepNovo achieves major ...

This research proposes the various versions of modified cuckoo search (MCS) metaheuristic algorithm deploying the strength Pareto evolutionary algorithm (SPEA) multiobjective (MO) optimization ...