Fast cgMLST/wgMLST allele caller with SIMD Smith-Waterman scoring (parasail) and an offline schema-side minimizer-overlap audit. 10.7–22.3× faster than chewBBACA with 100% DNA-sequence agreement on… ...

to the genome generation options, which is used by CellRanger to generate STAR genomes. It will generate sparse suffixs array which has an additional benefit of fitting into 16GB of RAM. However, it ...