This repo contains a PyTorch implementation for the paper "Designing DNA With Tunable Regulatory Activity Using Discrete Diffusion". The training and sampling part of the code is inspired by Score ...

Trained on sequences of length 131k, with a model size of 256 and 16 layers. Trained for 50k steps and batch size of 8. Trained with reverse-complement (RC) data ...

The knowledge that abnormal cell-free DNA (cfDNA) fragmentation patterns are found in patients without cancer will guide the development of more effective molecular diagnostics and encourage more ...

This valuable research contributes to our understanding of marine plankton diversity and gene expression by employing robust methodologies for sample collection and analysis. However, it lacks a ...

DNA sequences of nearly any desired composition, length, and function can be synthesized to alter the biology of an organism for purposes ranging from the bioproduction of therapeutic compounds to ...

RNA hairpin structures require perfect pairing between consecutive bases of the opposite sides of the stem. Random mutations are unlikely to create complex structures, so the origin of long stems and ...

Herbal drug authentication is an important task in traditional medicine; however, it is challenged by the limitations of traditional authentication methods and the lack of trained experts. DNA ...