GillespieSSA2 is a fast, scalable, and versatile framework for simulating large systems with Gillespie’s Stochastic Simulation Algorithm (SSA) (Cannoodt et al. 2021). This package is the spiritual ...

The Gillespie algorithm provides statistically exact methods for simulating stochastic dynamics modeled as interacting sequences of discrete events including systems of biochemical reactions or ...

This important study introduces a fully differentiable variant of the Gillespie algorithm as an approximate stochastic simulation scheme for complex chemical reaction networks, allowing kinetic ...

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Abstract: The stochastic effects in photoresist patterning is of great concern in the implementation of EUV lithography. The stochastic nature of EUV chemically amplified resist requires new modeling ...

Mangrove restoration in the coastal zones is a concept proposed by environmental conservationists. Among the cited advantages of mangrove restoration are providing socio-economic services and coastal ...

Ecological immunology addresses the interactions between host immunity and the environment. Locusts display density-dependent phase transitions between solitary and gregarious locusts. In control ...